Scaffold Ga0315908_10007123

Overview

Basic Information

• Taxon OID: 3300031786
• Scaffold ID: Ga0315908_10007123
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8053
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F016373	Metagenome	247	Y
F065525	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315908_1000712315	F016373	AGG	MMDHKTHLSYSIDRKWILMHDGSPLCDYKKTYDEVMLVVKHYKITLPDCTWNGDRGDWVITSTIQ
Ga0315908_100071237	F004231	AGGAG	MTVKISDFKHQICVYLDGVGECLVCFDILTPGDELDADHSDDYEIDFAVFDEQDKPITYDISKRHYNRCENKATDEMLDITTAWRKDWEGVV
Ga0315908_100071238	F065525	AGG	MYLKTYHKQMLRRLEHKPSPLKGFTHGDNNAGNVSVHFENYLNDLQNFGYVVCIEDVWHITGFGLAALHEKKNVATPTKMSNGTTTEFYDGKELKQTCARLGAYDFLKYPSKFGENLRYPRIYL