Scaffold Ga0315908_10004580

Overview

Basic Information

• Taxon OID: 3300031786
• Scaffold ID: Ga0315908_10004580
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9944
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F003659	Metagenome / Metatranscriptome	474	Y
F006697	Metagenome / Metatranscriptome	366	Y
F010159	Metagenome / Metatranscriptome	307	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315908_1000458019	F002259	AGG	MGMSAQQKMLHVADRLGLTTLKDMQGTTRMVYDSITTAASNFTFFKGASQRAFPLTNIGANGNQFQVDEALLVEKIGFFIPSAADGIAYASAAANIISVKFDLVIGNKTVLKDVSCEFGGEQAFYNDGASASSVIDLEGVGILIPPQVEYYVVAKPFNGDTRTAASVRLGCYLFGTGALLNFNTTI
Ga0315908_1000458020	F006697	N/A	MANQVQKVAYVDAKLGVGLPGQQTTRVIYDSVNATAGQTFFEFFTNFAGKTEFQTNLTTNKLDSAESMVIKSIQIISNSGTALLSDHLNLNIQVGNQTVIKDFDPSFNATPRGLAFDRLHSGFNSATNLELRLLTDIVIPPQVNFKATLQFANTGILVNEDVTIVLKGYGRIFSAGNSF
Ga0315908_1000458021	F000710	N/A	MASNINISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKSFEGIKFSSTTSAAPATLINAMQLRITLTINNDVVIDDVCAHDLGASTGAGITSGFPNYIPFPRALTGQDTILLRVTNSSGASQILNAVVFYKNEI
Ga0315908_1000458022	F010159	N/A	MSWQIPTLIEADIKSGKAQYRTFQTGNGGQSILPVPSNSYVVIFGYDFSPAGGGISVTGSDQSVIADTVITAPARINWLETQQISFYTGTDFYPFIHHINTECSAIPFTTNASSPDNEIATSYKTIWSIDNSPIARQVYITSTNDVTITHGLIQIATSATSNAIPVTNRTPQGLTYGGSGLVMNTQTNYGPAGTPQQFMQPSPKDYEDFAFGLLPNNADGQAFATPDATNGLWPSNAWSTAFGSIN
Ga0315908_100045806	F003659	N/A	MPTYSANDVLGRYLIALEDVPVYDLPNGTRIGEIKKGNSTAEVYSYVVRNGQVWWQFDYTIPGQTPGAYYVMQKDGRFRLSQAAGNVNVNPSELPSVDVFPSGGDLKKYAVWGGLGLLAFLLLSRK