Scaffold Ga0315908_10003039

Overview

Basic Information

• Taxon OID: 3300031786
• Scaffold ID: Ga0315908_10003039
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12141
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044903	Metagenome / Metatranscriptome	153	N
F060719	Metagenome	132	N
F075869	Metagenome	118	N
F085397	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315908_1000303917	F085397	N/A	MSQRNKDLPAMPVHPMQDKFGQVILMAGMSKLEMSALNFLTAQLRKNKIEDLSPEDISFLIREAYNIADEFCAYLESKSEKESGSLIL
Ga0315908_1000303920	F075869	N/A	MKNWLLIGLAGLTGWYFFGKSQLANRTKLIFKKLGFSNKKFQLVFGVQNPTGQSAKVSAITGEVYLGDKLIADFSSFGEQKIAPRSESELKIQASPTIGILQLITSKNWLKKGLQYTIKGTGNFDGIVVPFDYKSSLI
Ga0315908_1000303924	F044903	N/A	MARRKKRSAPSRRRKSRKMGAIGKSFLMDAAGLVAGAAAARVLTSSGKILPNIDAKLKSAGVIALGAFFPKLLKGSLGQSIGSGMVAAGGLGLLQSTGVLGAIDDAMQIPVSVMAGDDLSVIAGYGEDNLSVIAGMDEEYAY
Ga0315908_100030396	F060719	N/A	MKPQHLKINIQDQVASDKLKLAYNKQASDRARYEAENSVSKSTGQAFQKYYVETKVFYTTANIGSDCNEITFINNGTTNLNVADVPLGPNQSLRISGNRGEIDTTQYTLTFATPVNTGNQLIVIRKLYI