Scaffold Ga0315908_10002680

Overview

Basic Information

• Taxon OID: 3300031786
• Scaffold ID: Ga0315908_10002680
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12935
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (3.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060719	Metagenome	132	N
F075869	Metagenome	118	N
F083690	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315908_1000268023	F075869	N/A	LGYYLKILKMKNWILIGLAGLTGWYLLGKSQLANRTKLIFKKLGFANKKFQLTFGVQNPTAQTAKISAITGEVYLGDKLIADFSSFGEQKIAARSESELKIQASPTIGILQLITSKGWLKKGLAYTIKGTGNFDGIVVPFDYKANLI
Ga0315908_100026806	F083690	AGGA	MPEITADKIIGKTLFAKKDLDRLNSSLVKIGTIVAGSTVGQVYSYIQRGGKVYWQFIDFNNKPYFVLHTADSFKFSGDVKQAIEEKKQEVEKIAKEQKGSVPYYIEKYGKWILIYGVGAYLVATYIKSIK
Ga0315908_100026808	F060719	N/A	MNPKHLQINIQDEISADKLKLAYTKRANDRAMYEQENKFSKSTGQPYQRYYVETKVYYTTANIGSECNDITFINGGTTNLVIADVPLLPNQSLRISGNRGELDTTQYQLTFATPINTGNLLIVIRKLYI