Basic Information | |
---|---|
Taxon OID | 3300031786 Open in IMG/M |
Scaffold ID | Ga0315908_10000002 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 284764 |
Total Scaffold Genes | 377 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 64 (16.98%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.8268 | Long. (o) | -83.1913 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F042792 | Metagenome | 157 | Y |
F066488 | Metagenome | 126 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0315908_10000002191 | F042792 | N/A | MTPKQQVAIDNIMDYFKFEQVQKVMESLNWEWVASEEGIPTVPELRQEARRLLKMAFEEKTNISTGGFHVKYESDEDGEFIQLLFAVEEWYEDVEKDLVE |
Ga0315908_10000002231 | F066488 | N/A | MATICYAWDETPFAWIDTPFTWAEGCVIEKVIGGGGGAISSQTLRKRLKDLPEDEKEILINLFVRLNVDEIEFERKVNKNKNTKVKIKLSDIEVKASVERFVKVNVKINED |
⦗Top⦘ |