Scaffold Ga0310343_10292204

Overview

Basic Information

• Taxon OID: 3300031785
• Scaffold ID: Ga0310343_10292204
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1151
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum → unclassified Marinovum → Marinovum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.8367
  • Long. (^o): -158.0236
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008308	Metagenome / Metatranscriptome	335	Y
F017490	Metagenome / Metatranscriptome	240	Y
F029767	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310343_102922042	F008308	AGGAG	MQVSRIIKENLFIDSKSYSDLSPSMKDAVKDVFKFVEKGKGNIVEKFDEAIKTVASLHNLSIKQIEDYFDKEVIEKLGEK
Ga0310343_102922043	F017490	AGGAG	MAYQGSFKLKGATTAGGGAISASNFGRAHFVRVQTQAAGNTVTVKESSTVIGSIILVTAGDSVIIEKDEAHTIETTGNAVGSAISSPR
Ga0310343_102922044	F029767	N/A	MTITATKLTDNSFNIIVKANGVGNEEEQTLVDVVNSNNATSEPKVSIADIHYEILGSGKCTIFFKNDVEKKVEIEGRGNYGLKP