Scaffold Ga0310343_10176617

Overview

Basic Information

• Taxon OID: 3300031785
• Scaffold ID: Ga0310343_10176617
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1443
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.8367
  • Long. (^o): -158.0236
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018383	Metagenome / Metatranscriptome	235	Y
F041244	Metagenome	160	N
F084358	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310343_101766174	F084358	AGGA	MTLIDFDKKELLDISHALLSYRTDSTVIREGGLTDEQKERYKRLTSLIEKVSQLRNVCECGGKSN
Ga0310343_101766175	F018383	AGGAG	MEKLTFNNEQLEFLKFIVQDFEYNDEHEKYMIEQIENKIYQAQENQALKLLSGLN
Ga0310343_101766177	F041244	N/A	SAPSYATGGGCDMDNAIAVEDWENFDELSAHELSHLFGFVFKMCVLKRDYVRIGYYSKVFGGTNND