NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310343_10023034

Scaffold Ga0310343_10023034


Overview

Basic Information
Taxon OID3300031785 Open in IMG/M
Scaffold IDGa0310343_10023034 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3561
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.8367Long. (o)-158.0236Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F004869Metagenome / Metatranscriptome420Y
F007756Metagenome / Metatranscriptome345Y
F012583Metagenome / Metatranscriptome279Y
F056679Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0310343_1002303411F012583AGGAGMNPQQTKIEVFDEYVMSGGNKSLQSIEDLCDYGFDLCGVGHDSDLFQEVVIDVIRKLTRDLKK
Ga0310343_100230346F007756GGAGGMTKLNTLKRFYVNVKFEKYGTYTIEATSKEHALEIYKDGDYGWSDYSEDYGEFNEVVEDVEEEVFADTQLSLAGVF
Ga0310343_100230347F004869AGCAGGMTYDTEHYYAVQSFLEDDELHKIWNIIEIAMNREGYDVSNAELSMRLYDSELEENIEHDMENLLSSQSEGKDYGSKVDALVDSMGVTENKVSTSHRRRDLDTL
Ga0310343_100230348F001479AGGAGMPKEMLFLCDVYTKWLEDNELPHRCASDLLYGKDTMNKLRINQIYWLENFISTWDIISQN
Ga0310343_100230349F056679N/AMKLVTHIDVHERPDEDIQFQINNALGLWSSKNDAELWEDVRKYMFPYTLKSVEFEKNRPHSLTSFK
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