Scaffold Ga0310343_10019667

Overview

Basic Information

• Taxon OID: 3300031785
• Scaffold ID: Ga0310343_10019667
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3815
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.8367
  • Long. (^o): -158.0236
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019666	Metagenome / Metatranscriptome	228	Y
F024331	Metagenome / Metatranscriptome	206	Y
F030784	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310343_100196675	F024331	GAG	MNQADFQAAYFPLKPLYMLIKVDVDSGIVHDQDQAEKYAENHCNSLEYALCDWYYPDDPQYPYIAK
Ga0310343_100196678	F019666	GGAGG	MPHIYIPEVFISQDEYDMIQDNQVPIDAFVANKIREDAMFVYVQEADARYRRAQNYEWSDELYARRVPDNLSENPNKRSTICDI
Ga0310343_100196679	F030784	GGAGG	MFDTYIEDKAMIPVLLGYDWMVSHGTWTDCPYETYVFLKKKVIHNGNAQPLEVT