Scaffold Ga0310343_10009546

Overview

Basic Information

• Taxon OID: 3300031785
• Scaffold ID: Ga0310343_10009546
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5283
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.8367
  • Long. (^o): -158.0236
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019327	Metagenome / Metatranscriptome	230	Y
F032303	Metagenome	180	N
F032309	Metagenome / Metatranscriptome	180	N
F033761	Metagenome / Metatranscriptome	176	Y
F046625	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310343_100095461	F019327	N/A	MFNFITLKPFNLDTKYITDIQEIIEKVITEKKDEYWKNYKDYSIFDQTMITVGLVNDKVKTFSSIYTRSFYDNDVYRLFNRFLISDDVREDGGSKMYRGDHRFLEMIDQQVKYVKTLGPKFYFLSRQRKNTRWLTWYFDKYNKKYNENLIVSKDQYRICGGSEYDCCQTLIYPKDMQIPFEKLYK
Ga0310343_100095462	F046625	GAG	VKLKRFIQVNNFLSNEEIDSFNYDIKQEFKSNTGDLTLYHQKIPISIIDKIKKCIGEFSIRHSHIYQLKQPYRLHCDSGDKGNSYYTIIVPLDKNPQGGLFIMNQWSNKAYSLDNYYTQNIQSVLSFEERKEKINEFNPDISLPDTIDFQHIKDKRGFSVKEYIDYEYNKAIMYPGEFYHCSQNIKNFTSKKSLAIFTNV
Ga0310343_100095463	F033761	GGAG	MTIYNKHEFYFLDSAYQEKHKELFAFFENLGVSIEINEDFAGLKTLLTSKDKDDYPYDFDPAFETRMDNSTAFVLYAKIGNEVVATYAAKKLSMTTFIEAMKEKFSGTYEDVSDILGISAYSSCQWVSKDHRGKKIGRVLDHLKKHICFDLMKCTNNYAIHKEALKEYHTEHLSYSNSKKLATIPNGDVGGAGEAIDKIYNITYITDIEWAEKQSEIKTLYSS
Ga0310343_100095464	F032309	GGA	MRTETKEFFDYTKSLPFKDITHFWDIPYKEMLDEVKSVDEKYWRRPFDADNNQVDRMKLDDSESVNHYPGLKGDLIEAHGWKSLCFLNETGDSKDQITRFPPVFNTAGDYKETLKYFLNNRKWTNVSEYSPTLVKFFKEVISKYMHVGQIFVTRLEGGGVITEHNDIPEDSKHLLDGEQVHMFDMLNTFNLCLNHVKSCYSVFDNKVMPAYDGCLRWTNVGKKHWVVNMNRQPQYQIIWQGIYKKQFRQLVMENK
Ga0310343_100095467	F032303	N/A	MIKHITESEALYFVSKQEKKDQWHNDFYFWKLHLIALKNWPWLKKFYRGGKWLGHFDDLKLNGVYWYNLIDDEMYDGFLISSKIGVGIKLGRWLEKNIKYKTNWSCCDRKYVKFNERLGFEVKSVDTIEKREVFLLCRKKY