Basic Information | |
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Taxon OID | 3300031785 Open in IMG/M |
Scaffold ID | Ga0310343_10006926 Open in IMG/M |
Source Dataset Name | Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6099 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (63.16%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean: North Pacific Subtropical Gyre | |||||||
Coordinates | Lat. (o) | 22.8367 | Long. (o) | -158.0236 | Alt. (m) | Depth (m) | 25 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001504 | Metagenome / Metatranscriptome | 681 | Y |
F002137 | Metagenome / Metatranscriptome | 590 | Y |
F059072 | Metagenome / Metatranscriptome | 134 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310343_1000692611 | F002137 | AGGAG | MKISELIEALSRYDRDDDVTFYYLKNNTLTNCQFEDLGFYGDMGVEFTIQDTYDGIETVM |
Ga0310343_1000692618 | F001504 | AGGGGG | MTYDSEHYYAVQTFLEDDELHKIWNIIEIAMNREGYDVENAELSMRLYDQELESNIECDS |
Ga0310343_100069269 | F059072 | GAG | MNQLDQTIEDLKFCIETLGMNDGEVEEFMNVTSEFGVRPQYFSNEFIFLTGRGLEEDGKLHDPDYLNIAVFNAMFF |
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