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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031785 Open in IMG/M |
| Scaffold ID | Ga0310343_10003063 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8787 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (82.61%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean: North Pacific Subtropical Gyre | |||||||
| Coordinates | Lat. (o) | 22.8367 | Long. (o) | -158.0236 | Alt. (m) | Depth (m) | 25 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025520 | Metagenome | 201 | Y |
| F036270 | Metagenome | 170 | Y |
| F058913 | Metagenome | 134 | Y |
| F080142 | Metagenome | 115 | Y |
| F089953 | Metagenome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310343_1000306310 | F058913 | AGGAGG | MISLNNEEAKWLDDKWNDFYYYFQVEDMFEKDQELFQSIGKKLSEVKQ |
| Ga0310343_1000306311 | F036270 | GGAGG | MYIESTEKLGYHKGDPDGHRLLELIDLMGFDYDRFSSSGQQTYDEICTIIATVKEVKDDITK |
| Ga0310343_1000306315 | F089953 | GGAG | MEDLINEEILENIHEGYEIYKMTIDDGIETSSRYVIRERSCFADQDLKLVRHDHKTSWSLLADAEQALSEIVQKRFEEQAQ |
| Ga0310343_1000306320 | F025520 | N/A | MAIYEDYFVVSTSSYIKSVPTKLDKDFKKELIDDNGDLKPHVEKIIDNVFYYGKQCINATLPTLFIEIEYKTSDGHYLISHEVFLYEEDYSNLKELEDYKNKFDFNFSSQVEPEVYEIVDAFHNSQGCMCLSSGDY |
| Ga0310343_100030639 | F080142 | GGAGG | MKVRAGEFIKTNSGEVIWGSEAFIDEVFKTLYGNEFRNEVWSYNDALQKIKNLVQQQEQN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |