Scaffold Ga0310343_10000097

Overview

Basic Information

• Taxon OID: 3300031785
• Scaffold ID: Ga0310343_10000097
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35631
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (43.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.8367
  • Long. (^o): -158.0236
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017657	Metagenome	239	Y
F033839	Metagenome	176	N
F064809	Metagenome	128	N
F077401	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310343_1000009727	F017657	GGAG	MEDNRQEALNKAKKAQQMMLIQAEMEKQMQPTVPEVQAGSISMQPAILPNPKPQGTVIGADIYSAGNVYPGISGSTKLAATWNPMMDPAEG
Ga0310343_100000974	F077401	N/A	MTMKTFWAWKHDINSSEKNKSGYTKILARDMNSAYRKAHKHYKHHMFNSDFNVSVMSGETDKHGYAKEAQYSTGKWTRKAWSTYKYFHSLEPEMQERVHNHYKEFGDDWKGQDKTDLRFLVALLRQEK
Ga0310343_100000975	F033839	GAGG	MNNLSPITRAFLTVGIGVFIGILPVFMIINSLSNTAIRFCKGYGSDYTIVTVDTPFGSVKRCVAKD
Ga0310343_100000978	F064809	GGAG	MLNTTFTGNITFAEIVEQDAKVENPFLKIVVAVNDVNDNGLRITVRTKNGLLEAARNGEDLVGARVVINGTIDIASIRSHYVDDEGKCVALKQPNARVYANSIERMNRKPAPATVQTELAVG