Scaffold Ga0315899_10240640

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10240640
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1809
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009141	Metagenome / Metatranscriptome	322	Y
F014614	Metagenome / Metatranscriptome	261	Y
F021513	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_102406403	F021513	N/A	MSMYVLSESQFDQITKALEAARFALETSQHVQLDLTKPKQTIPLPAGEKLVRTADVQKVKSQSKTRKSSRKGQRGVAVLTEPKVLEIKRQLAAGGKTVGAIAREFGVHMTTINCIKWGKTWKHVQIQQPVPVVVAD
Ga0315899_102406404	F009141	N/A	MVPFYRSYLLGGKMVYLDKLSELSDSELNMLNIETMASLEEARRDYEAVENKQSEEGGSVYRRLKVAGYFQAAIKLEIQN
Ga0315899_102406405	F014614	N/A	MTDWYADYYRQSRGYNDNDLRELRSAPRRPSTQVPDVFKHRFADPAEYDAWVEERRRLYF