Scaffold Ga0315899_10168982

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10168982
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2221
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027501	Metagenome / Metatranscriptome	194	N
F082596	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_101689821	F082596	AGG	LKQLTNDLAIDLARGRDDIEFFARRWLGIEGNPGQVAWWKACSERDDTGYRPRYITTVVSAGNRAGKTLAMAVVCLHHALYKLGLANPTQGDPDSHRRWAESPYEWYHVGIQQETAELVFREIETILSSSHPAQRGRGCAIIRELGKVIDTQKKYRGEYAWVKFNPVIGGASIHFRTTQDRAKALLGKDMNGI
Ga0315899_101689825	F027501	N/A	DIKAGIRWIIDNTGVDEAVIEFLRTFVTVSISVALGLGIPLLDITGGDFRTVLSAGLASGLQVLIKFLDPKNTAFGIKEKSAEDKAAAEKQFDI