Scaffold Ga0315899_10126414

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10126414
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2620
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016782	Metagenome / Metatranscriptome	244	Y
F086809	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_101264142	F016782	GGAG	VETTSSPLYAAATESLVSDASATSTFEKMIQVAYTHSTVDTFTKELKDTEKLIKKDFEISSMPGPWRSAKSVIHTAMKIGISLVDDNGSYCGKTYLQNKIKETKPDKEEVTNQEYIDKVLKLLMEIPGHLDAKTIHSEVKKMLFA
Ga0315899_101264145	F086809	AGGAG	MNLDKQLDLVDEMQWEDSGKVQMISLEDAGLEEPVLVEETHIHGHVFRNGIHAYLDWFYDGSIENDDY