Scaffold Ga0315899_10124711

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10124711
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2640
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F030094	Metagenome / Metatranscriptome	186	Y
F081267	Metagenome	114	N
F093864	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1012471110	F007525	AGGA	MKTYEGVTVEYKEVIPTSKQMAEFYVWGEGYESYATIRYEDRVVEVERGGEMYLSIPDVTNGELSEHYQSIVRYSDDLSDIGINDDIQLTQFIKTISNSGYQVYHMNPWWEVFSHNSDMGEVYDTFYE
Ga0315899_101247116	F030094	GAGG	MKLRGIFEGTFESVWSMEVPQLEWESYLDKNPDFDENDRDDIQEMWDYFKRVVGCYDECDDTVDTDVIMTGIETYGVEVEIN
Ga0315899_101247117	F093864	GGAG	MYNYNVEFVLEAMVMITHVSFDEPDLPDDFIIQEARNNILSYYKIDPEVLHLQDVIVHEV
Ga0315899_101247119	F081267	GGAG	MSYQHHWVVVYDEDWGAFMVDIETTMAKLSEDQGVVYNKDTGKWEFMEEGSELQLEYLRLEEILAYNLTRLDLTAERV