Scaffold Ga0315899_10102115

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10102115
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2950
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007170	Metagenome / Metatranscriptome	356	N
F024791	Metagenome / Metatranscriptome	204	N
F058132	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_101021152	F058132	N/A	MSLSNLKQIPKDADRGILVVDLSSIAGDGAELRFREPKAADLFPDSKELQSLRVAFAEFPEAMLYQIYLLGRCYVPDPTDGTEESPLRAFGNLARTSKQTFFRILGEFISWYPTDDLQGRVKDAKNDSEV
Ga0315899_101021153	F024791	AGGAG	MPFTRTSALIGENCVVTVAFGGYQDGTPSAFTADTYTCIARSVRFSTSVNTVDVSALCDTQNKAQATKANGSVEVEFLVDSVVGPIFYGKDGFYCQIVLTPGTLAARTFIGVVTSTGISVANEEAVTESATLTLGANGVTTAWA
Ga0315899_101021154	F007170	GGTGG	MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMGVYNTIAPQIDPISRKQPITPYIVFDRAGNAGQDQDTLCGSRVFTYPTYRITVWDTASGAVSMNQSAAIMSRVDTLLDNIHVSSTTPRFYSRRESTAQTFGLESGGRTDFGVTAVYRMVTQQ