Scaffold Ga0315899_10043159

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10043159
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4738
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003687	Metagenome / Metatranscriptome	473	Y
F007026	Metagenome	359	Y
F019817	Metagenome	227	Y
F035274	Metagenome	172	Y
F059883	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1004315912	F019817	N/A	MTLTVTPPVGLSINQRNLYMYFLNHNKKYKNTPCYVPRCPSTRSRIDLYLNALIKLEQYGLIRVDRSSANYTGWIMLEPKTGLXLHNTSVVLFAIRK
Ga0315899_1004315914	F007026	N/A	MEQAKKYPTIDWTKNEYHQLKLVIDALKAICAREDKRHQMDEHLDPHMRNIVDEVIGMLEDEIDYDPTPNEPGEPPITMNEMHTAAWKEHLAMHS
Ga0315899_100431593	F003687	N/A	MNYQAVEQLLTQDARLLARRDAPVIDTELEEQRQAALELFFQWQDGMREFQDLMPFCVVLQRKVDLNRDLLRWERRHEDXLLL
Ga0315899_100431594	F035274	N/A	MITIGKEDLDRAINMFKIDGYYIEFKKTVCYLCWVATTEQAQEYIDAFLECLDVLIDGQWVDTYGSYEQGVDVQLPDQEYIACRYILETN
Ga0315899_100431597	F059883	N/A	MTEDNQRYHLIINVDEKYAIVNALAFYHAHHTLGALMDEDEREQYMLAFQEDGPSVVDSLATRVANTF