Scaffold Ga0315899_10033986

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10033986
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5372
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (21.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004723	Metagenome / Metatranscriptome	426	Y
F018713	Metagenome	233	N
F047570	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1003398616	F018713	AGAAG	MTPDINLYHEIPQEVKDAALFLGNYFKKQGIDNWALYDVSSRQSFNGAYNQGLDTAISLVEECSDIETIICGLENSKRQFSNEGDGIDYQRVFKYKI
Ga0315899_1003398617	F047570	N/A	MTDENKLKIVTLSHNIKALCYILDKKTFSEHCVANDNFFEIDSLFELAKELKEMNKEE
Ga0315899_1003398618	F004723	AGTAG	MKKGDKFIHTDILGKKYELTYTGTRREVKGCEFEFFADDKGKVCFFTDSEVKKMEKKD