Scaffold Ga0315899_10029234

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10029234
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5817
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (52.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F004898	Metagenome / Metatranscriptome	419	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1002923410	F004898	GAGG	MDLSELIEELREIEIYGSEPADWMGYLYDDDFWVPDHELAY
Ga0315899_1002923419	F000744	GGA	MKITEATVNLNVHEMGVILSALQNLENADEHRIAREYGSVPALYDKLYSYWELMDRSQTGIRNDVVPSF
Ga0315899_100292343	F000345	AGGAG	LELSLEKMTEPNELGKVLKEWWDSDAYKEMQKSHQEGLERAVGKYFMLSESDKLDMLQAICYIMCKAESEGTSHRGLQDALGVYPAGFWVSELMDVHNALWSYYHDKKQEKELQDDLDSLDDFIK