Scaffold Ga0315899_10027164

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10027164
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6040
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007859	Metagenome / Metatranscriptome	343	Y
F008688	Metagenome / Metatranscriptome	329	N
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F014619	Metagenome / Metatranscriptome	261	N
F019476	Metagenome / Metatranscriptome	229	N
F024047	Metagenome / Metatranscriptome	207	N
F099167	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_100271641	F014619	N/A	NVVYENGILDDIKTNKLKFNEGSIYYPSVTLKRLVKYVKMGYDVEDVDLKLLTHAFYKSKKKAIDILDQDLATKKPIETYTGLK
Ga0315899_1002716410	F008688	N/A	MNRFNKIMLGSLATILLTAMTVEPPKIKLYLITSYRGNDLIIEKIYLKKENAEKYRDMFKDSHNYTVEERELTE
Ga0315899_1002716411	F007859	GAG	MKKLLIIALLSTGCTSGMLLRYSYNRALETLPPCSRVHAINNNYITYSMVENSTNNVYTTYTNYYRAYYNCDGKITKITPNK
Ga0315899_1002716412	F010081	N/A	MKEQIDSIIKKHALKMQEVDKTKSIPMIVKELDGIVYTMYRELYGLRDIRADNYYLNSFTADNKKGHCC
Ga0315899_100271642	F099167	N/A	MDLVMNSKILRRTVDIAKAMCPLNLEHRCSHIAFLIKCGKIVHIGTNSCKSHPETLKYDYKNHQLVGLHAELSVCMKSGKEDLRDFKMVVLRVDRTGKLNNSKPCCGCQSVVKQFNVGEVWYSNSHGEIVKN
Ga0315899_100271644	F019476	N/A	MNDKKLKSAKIVLDIEWESVDDSDLPSLWDWKRIKIPMDLTKVKYVGIQQSNGPENVSNWMGN
Ga0315899_100271645	F024047	GGA	MTIVKKSDIVDWLKNAVEKKMVKELNVPNAKVYLSCDRPHPDVILETKNADGDLQIVRFLII
Ga0315899_100271648	F009135	AGG	MSTNKAKYYLTINLPPNFDEVDADAIKADLMAYINSKNQYGAMYGPKSHKKGITVEKVIYRTNED