Scaffold Ga0315899_10025406

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10025406
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6270
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F007260	Metagenome / Metatranscriptome	354	N
F013879	Metagenome / Metatranscriptome	267	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_100254063	F001272	AGAAG	MLQPPNMEITVKLTQEQANGLLQLIDIAVKAGGIQNAKVALPLVDLIVNAAQPKSE
Ga0315899_100254068	F007260	N/A	VNLIATSLQLGMSVLQGAMGNPSFLWQGQLVRCLPAAITDANSVISGGFQDNVQVRLLVKLADWRLADSTLVTVDASVWSCDVGSNADRLLQENGSLILQENTDRLLLTFGKMIPVVGRLVTYDGRQLRIMSARRDGSGAYYVLDLGAKTK
Ga0315899_100254069	F013879	GGAG	MTPTVVVDTTRFSAAWREYLPRTKRSLAEAINARTFFLLLRLYCLLPPKSPQAARNKILDYYNRPVGERRRDKKTGKLVGRSRELRVVHLIAQAKNKKAGKEGLYGEKMREAAASLRRRAAGSVGYLKSCVVKGIKKLSPSFTQFGGTRRVRKGSAGVRSIAANQALLNLANQYGLPTENVSVHRGSSAYAYNAKAGISPHSHVRMNIGLADNQIGKVNSIYAKAMQQAYDDEAKELEIHIRAKMEEAAEVLEKHGVVVK