Scaffold Ga0315899_10007064

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10007064
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12076
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (46.15%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F002867	Metagenome / Metatranscriptome	524	Y
F004722	Metagenome	426	Y
F009141	Metagenome / Metatranscriptome	322	Y
F014614	Metagenome / Metatranscriptome	261	Y
F021513	Metagenome / Metatranscriptome	218	Y
F090297	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_100070641	F001841	N/A	PQPKRPRKPTLGYTVGDIPYELLAVVRVSWFRKGMAYEVEEYQIEESDDAEKQFRYIVGTALRQGADVCVLTQYEPAALGVQE
Ga0315899_1000706413	F004722	N/A	MSPARTGRELVLEWLNREIRAAKTADLQRAAAFLQWARDVRKGCAKQRGGARVAQANAWRKQVDDDVRW
Ga0315899_100070642	F090297	N/A	MYEPFAAKVDNLNLSPWYYAVSWARHSLQAQVKRYSELGLNTAYDEKQVAQLLELEQFLKMSWDQWMESVLPSETAQEVK
Ga0315899_1000706422	F002867	GAG	MSVVHSTDYGNGYSLDQLENERGELYYRACKGSICRYAEDHYIAMMYLEGMGWDPKQQAP
Ga0315899_100070644	F014614	N/A	MTDWYADYYRQSRGYNDNDMRELRSAPRKPSTEVPDVFKHRFADPAEYDAWVEERRRLYF
Ga0315899_100070645	F009141	N/A	MVPFYRSYLLGGKLVYLDKLSELSDGELNMLNIETMASLEEARRDYDAIENKQTEEGGSVYRRLKVAGYFQAAIKLELQN
Ga0315899_100070646	F021513	N/A	MSMYVLSESQFDQISKALEAARFALETSQHVQLDLTKPKQTIPLPAGEKIVRATSVQKARSQSKTRKSSRKGRRGVAVLTESKVLEIKRQLAAGGKTVAAIAKDFGVHVTTINCIKWGKTWKNVQLQQPTPVVVAD