Scaffold Ga0315899_10006913

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10006913
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12215
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (24.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F002867	Metagenome / Metatranscriptome	524	Y
F004722	Metagenome	426	Y
F009141	Metagenome / Metatranscriptome	322	Y
F021513	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1000691317	F004722	N/A	MEWLMREIRLAKTSDLHRMAAFLEFARRVRKGSRQQRNGARLAQSNSWRKDVDEDVRWRV
Ga0315899_1000691324	F002867	N/A	MSVVNTTDFGNGYTLDQLENERGELYYRACLNSVCRYAEDHYIAMMYLEGMGWDPKAAPQ
Ga0315899_100069133	F001841	N/A	MFTPPNFLLGLMRVVAWAFWRDPVAKPEPPQPKRPRKPTLGYTVGDIPFELLAVVRVSWYRKGLAYEVEEYKIEESEDAQAQFHYVVGTALKQGADVCVLTQYQPEELGVPV
Ga0315899_100069137	F009141	N/A	MTENAMVPFYRSYLLNGRTVYLDKLSELSDSELHLLNVDTKAALQEARHEYEGIENKQSEQAGPAYRRLKVASYFQAAIKLELETD
Ga0315899_100069139	F021513	AGG	MEQRLCGLAIDTDPLLPTTLHTFHPMNMYILSEAQFDQVIKALDAARFALDTCQHVELDLTNSKQTIPLPAGECIVRTKSVQKPESQSKTRKSSRKGKRGVSVLTDVKVLEIKRQLAAGGKSVGKIAKEFGVHPTTINCIKWNKTWKHVQLQQEIAEAAA