Scaffold Ga0315899

Basic Information
Taxon OID	3300031784 Open in IMG/M
Scaffold ID	Ga0315899_10004882 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031784 Open in IMG/M

Scaffold ID

Ga0315899_10004882 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14476
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14476

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (71.43%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.8268	Long. (^o)	-83.1913	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.8268

Long. (^o)

-83.1913

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F011755	Metagenome	287	Y
F012447	Metagenome	280	Y
F023328	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1000488214	F011755	GAG	MSNVIYLHYHYDYDNSKEVACRDAKCYQKRLEDKKKLEEYQFEVDCDLARKENLRIVEDMIQDPRIDNYNDY
Ga0315899_100048822	F012447	N/A	MAKAIQLVKVDKDYRGLLRAFSKMDDIAKNDMKKIAQNLAERGANYAKGAANNAPYNVKQARAVAESIKISKSDKAPSFSIGGRQKVGSSAFSAGYVIMGNEFGSKQYKQFPRRSGKGGKEGWWLYRAMSRFQPTIAKEWLAGYEKIRDAWKAGL
Ga0315899_100048824	F023328	N/A	MTVYTPTYRVTIAGVVQTSATLEDGTITYGRNDFFEATQPSYCNIELLNLDGTSPVVELLDTVLIEVTDSTGAFIKLFTGEVSGVYNRFEGAGLGGKPNTLQIQAIGALGLLVKRYAGSVAYPEELDGARITRILEETLYVAWEDISNTFTWNDFTTETWANYGVQGIDTIDAGRYEVLARPAQVEQAYNLTDITQQSALGYLYDTPEFSIGYADAERRSANYTTNLIELDANLVNADIQTRLQTADIVNSVVIQYDDPVLEVAAQNDTSINAYGLLEEVRSTILAQTVDATEQATNFVNYRGTPKVSLEEVTVNLAHSDMTNTVRDNLLGVSMDTLLYLDNIPVGLIPEGYNEGFVEGWTWTLGRKNLELTMSVSNAIYSTLDVQWEDYNSAIQWQNLDNATRWLDVI
Ga0315899_100048826	F001805	GAG	MATANKILIQDGDQVIELTGANKDAFIADREATAQSSALLEAEYKAKQDARDSAIKKLGEIAGLTKEELDAIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315899_10004882

Overview

Ecosystem & Geography

Associated Families

Sequences