Scaffold Ga0315899_10003579

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10003579
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16928
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (24.32%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F006260	Metagenome / Metatranscriptome	377	Y
F007798	Metagenome / Metatranscriptome	344	Y
F010397	Metagenome / Metatranscriptome	304	Y
F019824	Metagenome / Metatranscriptome	227	Y
F023346	Metagenome / Metatranscriptome	210	Y
F031030	Metagenome / Metatranscriptome	183	N
F087174	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1000357919	F006260	AGGA	MEKELTIKDKVTNPIIIQHDDLKFDGKNITIPGYYVGVLLEYIADYNLSKLSQADLDDHAAFRNFLLDIEEYKNGGN
Ga0315899_1000357920	F031030	GGAGG	MGMFDDVVCKYPLPLPEDPKGYCNNKYQTKDFDNVMDLYEIREDGTLWVYDAMYEYTEGNPNGKSLSEKLPTRKEIKVWWQRIYPITNTVKLYAYDCDTNDKYDYWIEYNLTFLDGKVTEAKLVEFTATDNSERKKQHRNDVEYWTKRRNFEQTVCYRLFGKYYNKTITFICRNIHKSATWITYKIWKVEKFLKI
Ga0315899_1000357921	F001840	N/A	MKDQDSIFLICDCYEHGLLVEKFHDEEEVSLSLFERGLKGRTLCWSERLRWCWQILRHGKPWSDYIILNTENQKQLKEFLNECK
Ga0315899_1000357922	F010397	AGGAG	MNVSEFERTKPVITMQKINELIKLIDEERVKTEILYRDRVRSLDDISILLKEAKKSFVKG
Ga0315899_1000357924	F023346	N/A	MNNTISKNIIITYAKALRAIQKDQIDPYIDLIEKELIKVYPELEDRDDNALNWAYDILNAESNAEVVETLTRLEKIITDERKEKWVCSYCGKNTYNDDIDYLFGTNHIGCVLEEDIKNREHSDPDYILDARLQKISDIERKLDTYESELNKLHAELVRLRSDYDHEPTN
Ga0315899_1000357933	F007798	N/A	MKDTTLKQLVRDRNGQPRGYVVATVINDSVRVGWSYTNTKAGDRFDKRKGFAIALGRAENGWGKNVRVPHNVSKSLDSIAKRSVRYYKNVEFGWVA
Ga0315899_1000357934	F019824	N/A	MDKYITDNFSGSIDDLLNHCSNLDLDKVEEQVQSEEKEACIQVIMKELECNEFEAEVIYNEISLAETKKVVDGMVKDGLLYISGYNEEGEPLFNLTELGKAVRKELDNGK
Ga0315899_100035796	F087174	N/A	MSYYIKDTTKNKVVTFTDPNEVVSYLENLCRTKLRKTRKELMFEMESLGHGHDDPQGVNFTTMMGEYFEVGALKKDGRMVRTNIHELARNLKYRNEMGD