Scaffold Ga0315899_10003119

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10003119
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18055
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068609	Metagenome / Metatranscriptome	124	Y
F073486	Metagenome	120	Y
F095168	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1000311923	F073486	AGG	MTTTFHWTGSHVSGSRACAVVRYAGATDTRGSRWLATIKRDSDNTWRASATYQEGPITAALRAASKAGVEWQAVTCHSIDSDTYCVGF
Ga0315899_1000311924	F068609	AGG	MTIFRTTEPRGTFRVTYETVTAASAEQGDCADRGWLSWNGSPADEYSDSVWDLRDLTEKLAGCYAEGTGERVPSWISLDPGSDFWLSPFWRDLAGEDALGVTAYVHRPDWITDASWLRVCRLLGWRWRY
Ga0315899_100031197	F095168	GAGG	MTRDFKNLINDMKELVNKSARNAAVEIVNGLVEAGPAYSGQFSSAWYAVEPGQSPGGPRSAGGHTYKYNLRNVPQARFRSGTYYEIVNGASYAAQALDLDSGVFKTQYDNDGNILDPVKDPVAVGTRTGSKRGQVSSGTGFAVSTAPLDWYVTYTSGGAMQRDLGNGVRLGFRQGPKGGNVPGTGFG