Scaffold Ga0315899_10003048

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10003048
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18303
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (19.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025686	Metagenome / Metatranscriptome	200	Y
F090100	Metagenome	108	N
F100702	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1000304821	F090100	N/A	MSKSVTLSGNQELQFVTDSWEKTVTVYLFDTINDTRVTLTEFYGGRWNSKSISHLDKFFELIRINPKIKIAMKKAFGELRAETPVSTFSTSLKCFKRRFIIKIKKLVK
Ga0315899_100030483	F100702	N/A	MTLQELKKEVAKKIMLKKNAWTDTYAKEGAPTDFERQTYKEYADIIDREIKEMIPESEWLTIELTGCAKGELSHYDIENSLRTQFNAGEGIQYDSEGGQFWVYVKSSLVQKVLRHIDYHFPGQIDLNVSVNKYNDNPWFQNWSQAEKFLSAQKEG
Ga0315899_100030487	F025686	N/A	MAVITYIRVTYVALSHYGKPIATAHTEKDLKDGIDEYYGIGTDNKAKYIEWVGNNSKYPDELEGHHVYEVDDFNGGLELEHVKVYCVEFYPYTKYEVEN