Scaffold Ga0315899_10002510

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10002510
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20296
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (26.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008128	Metagenome / Metatranscriptome	338	Y
F019130	Metagenome / Metatranscriptome	231	Y
F020160	Metagenome	225	Y
F022401	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_100025101	F019130	N/A	KITGRNYQFTLVKKKELTVEVSTDPEFWHTTERELYCVEETITTTKRVVLRSMSGEVLDERTEPKTTTKVLPNLDAIRSAYQEGRQLPHGVKVVQEYSVRSKRIFGEPRVEMVSSEYPGELLPEDSSAD
Ga0315899_1000251025	F020160	N/A	MAYNPQGKMECRKRLAWTIACEQAVVTKEDAVQIYNKVMKEFETIDKRQQYKERESNKTQLT
Ga0315899_100025104	F008128	N/A	MKTVPVPRLTLSFEVDIEVEYNSFGGKTADEIAEALQDELHNLVFELDQVIGMDSHCTSIAPYNLHDEL
Ga0315899_100025106	F022401	N/A	MDTTQEPIDSVKSWQDWYRKHRIVAQTDKPLEAKDLRENMHDTTNAVETLLETDPKAMWIEKAREHFADTLAEYQYELSGKDFYKAFYQAAVEAMGYSEKEYQRTKELVDMLRYHHLGQD