Scaffold Ga0315899_10001231

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10001231
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29623
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (20.51%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026831	Metagenome	196	N
F035761	Metagenome / Metatranscriptome	171	Y
F048260	Metagenome / Metatranscriptome	148	Y
F077292	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1000123111	F048260	N/A	MYTRTNARNKTNFVGHNTSGVEIYLSTPLPKAKKASRLTLRTGKTRVDLDGRQIKALREVLNAGFNAKA
Ga0315899_100012312	F077292	N/A	MYINMKSSKQLVNKLVKETLEQKYTNASASWSDLIEELSKEIKKPIELDDAGNYNVCECEPYHISIRPIVHGICDVQAFKDYSDRTKKLFMKFDDVKKFVKDYLSSKDLNYVDSALTKVVDNTKDKQGGLSADKEENMEHMVDFKDNYKPIKNIKAEPMNKEIDNPTEPMQVVDKFVKSSEYKSVNPKYTPPTLPKALQKLVVKYTKGGKAKKK
Ga0315899_1000123134	F035761	N/A	MDQFVTTVKLNQELYNQFKELNIRGKISFQDFVNKCLERYLSDSEFQSEISESIAQKLSFNAPFSLSKESK
Ga0315899_1000123136	F026831	N/A	MKKTLLILLTAVNLYANDLFVYDTNGQVELTEVINNKLNVLTTTVGKTYTITNSLNINTTNSSVSYIVPYRIAVFHKENTSTYFNQTSTEYVNDFKLPEVVKVKDAMFNFTVNGELYCVSEGTNVNTLLTSLCSVAFGQSTFFVKSNEKFTHLYVVSGTVTALDNKSKKKKELKSGDYLVVTPQVIMNAREASVTKLGNSFSVKEVEDEEKEVHSKELIALKSKLDNTLFVNYGQNISGIKLQ