 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031784 Open in IMG/M |
| Scaffold ID | Ga0315899_10000821 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36779 |
| Total Scaffold Genes | 55 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (14.55%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.8268 | Long. (o) | -83.1913 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005050 | Metagenome / Metatranscriptome | 413 | Y |
| F008936 | Metagenome | 325 | Y |
| F024730 | Metagenome / Metatranscriptome | 204 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315899_1000082142 | F024730 | N/A | MCYENLLGLRDCNVPEPTTGLYIDELGINNTFLGQLITDQYNNGVELFEDKRAFAWKKLSSDMLTRLSPLMKSDTIIESKRIGQVVTDYNNIETALGAGNYGGIRVKIDPNTLSYLTLFISDITLAIDSSNTNVPILVFDMTTLQLIDTITYTAGGVEYYFGKEYFAKRRKLDLAFVYESTMNTVKFITKKGACYDCGGKIREAHICPFVNAIGINLTTDGVSVLSSSTSKYTTGMSLNYSVNCDRQGWLCSVGNQMSLAIAYATAVEIYNYALTVSPNQRVNTAVFVNKGNKPFATAAAFEGIVAARDIAAEQYNAELTALLQGIRLPDDNHCFDCRKNIKYVTALP |
| Ga0315899_1000082148 | F008936 | N/A | MATSAEKAQLQAWRTVEPLLREMDVDSNGNITQTDANINRIGIIAEELNKVLAGGEYKEAVSKFLSQIGEGVKLSTEIAQTFEAGFEPTEAQRRLVQISQQNAINSFFGSGLRERVTQPFLEQLTANIAARAPLREAVKALSATIIGNDKLDGNLLGHIKTTASTAQAIADRSYSAAVNEEIGINWFEYLGGEIPTTREFCAHREGEIFHRKEIEAWGNGKNSAGIDDIKGGTWAGRIDGTDQKTIFTNVGGWNCRHDLVPIPATKVPETVKARVRAQGFID |
| Ga0315899_1000082152 | F005050 | N/A | MGCVSYCDSELLAHNLVDCNEYKLGGVSAIIVGACNTTLADPSDATEVQNLLTAGTARIIEDIRFALPAGSPVTVDSPIGCGTPIRINEDRTATLYDANVTDENNLFWNDVNNRRIGWILAYMCDSGKVIFIDPPVGITTSANFILPEQNNELQRYEVTFSWRDKDIPAQYNAPAGIFS |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |