Scaffold Ga0315899

Basic Information
Taxon OID	3300031784 Open in IMG/M
Scaffold ID	Ga0315899_10000627 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031784 Open in IMG/M

Scaffold ID

Ga0315899_10000627 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42166
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (56.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

42166

Total Scaffold Genes

75 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (56.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.8268	Long. (^o)	-83.1913	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.8268

Long. (^o)

-83.1913

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006785	Metagenome / Metatranscriptome	364	Y
F010026	Metagenome / Metatranscriptome	309	Y
F021513	Metagenome / Metatranscriptome	218	Y
F022403	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1000062714	F010026	N/A	MAVKSKTALGRVEHQLGRPKRTRQGQGQHSRPNHGRKKLRGQGR
Ga0315899_100006275	F004722	GAG	MSRSRTGRELVMEWLQREIRLAKTADLQRAAAFLEWARAVRKGCSKQRGGARVAQSNAWRKRVDEDVRW
Ga0315899_1000062754	F006785	AGG	MTGGEWTTKGRQREQREQEREQLRLEKRHLRDLRWAIERSTVEASDWQDLLSLQAAHGREGPIQLWRELIPYWRQCQRINGGADIPPDLFPQATGLFPRDSPAAPANRQKPGKGTARKVRSDAGIAKPRRQA
Ga0315899_100006276	F022403	AGGAG	MPLRHGQKVYCQLLLDMHRYKLAEELAARDGKKVTGMLREMVYAALEKSLPASDYKAAEAADKASWAESVQRRVQGRMRSKQQPGVSEVDA
Ga0315899_1000062772	F021513	N/A	MNMHILSEHQFQMITQALDEARAALTQCQHVELDLTKPKQTVPLPAGEKITRKAQSQSKTRKSSRGRRGVSSLTEGKVLEIKRQLATGGKSVAKIATEFGVHSTTINNIKFGRTWKSVALQQTAESVG
Ga0315899_100006279	F003805	N/A	MNPLEHSLESQFNKASTDKWLVDRFNSGDYRGLLEAALILNTLHQLEQTKSRWAIREAANNLTERFGLDRDSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315899_10000627

Overview

Ecosystem & Geography

Associated Families

Sequences