Scaffold Ga0315899_10000216

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10000216
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71253
• Total Scaffold Genes: 113
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (52.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033783	Metagenome / Metatranscriptome	176	Y
F054011	Metagenome	140	Y
F067693	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_10000216107	F067693	N/A	MAQIQHYCAQNDRNGNPRRCYVLLDHGNPIAAWDEQFYGHDAVPGVWRNDAYHAERINCTIAKYKQLLRTLPSPNWAHDVPGYSHLRTLCS
Ga0315899_10000216109	F054011	N/A	MMYNHIREFHKDQILHVVNNYMTSEIRNHLMRECPAAYNALCGRVVITSQVQDTGRKIIERPTDVHLSEFD
Ga0315899_100002165	F033783	AGAAGG	MKDNDFPIRMAGQRFGLDATRMSAVTPSEVTSRLRYQQTFPKT