Scaffold Ga0315899_10000081

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10000081
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 118219
• Total Scaffold Genes: 122
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (13.11%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F003038	Metagenome / Metatranscriptome	511	Y
F004953	Metagenome / Metatranscriptome	417	Y
F010462	Metagenome / Metatranscriptome	303	Y
F022861	Metagenome / Metatranscriptome	212	Y
F042298	Metagenome / Metatranscriptome	158	Y
F078619	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1000008110	F004953	GAG	MMLVQATWNDKQTFRMIPITESCPYVECIFDPDTKVFVVISKIKKTALHMLPKLDDYGQSITGTKGIKQERHKIEVFQEFYLEDMTAIEELIKIFSVNNKFDYKSFMTESEK
Ga0315899_1000008123	F003038	N/A	MGLSTTDLGTGSGGSSAAKTIAPGNHTLKINSIALEDFQFIEGAKHLILNVETEPIEGFEGFMIDKDNPDAGHYAGQIGRVKASQYAYADGETKSGIKIQRDRSLLIFLQSFCKTLGINDWFVEQDGKHETIEDFINGFNKTAPFKDKYLEFCIAGKEYLNKNSYTSYDLWLPKADNRKYAFGEVEAGKVITFDESKHLKKLEIKDVNNFGDDDDFGTSSNSSSDFSLD
Ga0315899_1000008139	F078619	GGA	MCHGFECPVKEKCKRFSAKPDEHWQAYFLEPPYEKTDTSFKCDYYWGDSAEAIWKELNDIMGIDLPE
Ga0315899_1000008142	F042298	N/A	MGRMKEVYIQVLQANNGIPEDMTVGDFLRMTDLNIYHWQEYERAQERARLQSNKQTDLGEATENSEGKSIRREENS
Ga0315899_1000008144	F022861	AGTAG	MKAICIDASNKPSKVSESEWLIEGQIYTITRVVRMGLQNNKFGVLLKEVKLSSESFPYELYDADRFIIIDELLKSEQEETILEKEVELNII
Ga0315899_1000008150	F000716	N/A	MILNLMIMYKMEKLKQDVRNYQLQGGNTYMQYEQDRYSVYQNYLYKRALYGLNALTEQELATMCSKKKQRILNVYKRAQVVLNVAKQRATIEYTNFIFKTLFPKSAITDALLSMTETDDKFKNTLTFKDLNIGKDKIITIFIEEGILPKNFLSLQEAPVSLPRLKNEVKA
Ga0315899_1000008152	F010462	N/A	MQVMLYQLPNGKVVHLTIEEYLSLTEEDIQYLMSIDYGEHIRDPFTGSAVETNTREKYIDTEFLPMEDYDLNDMPSDDLPFDDIIDLSDSLDN