Scaffold Ga0308418

Basic Information
Taxon OID	3300031783 Open in IMG/M
Scaffold ID	Ga0308418_1003012 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7958
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7958

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (92.31%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5387	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5387

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F005028	Metagenome / Metatranscriptome	414	Y
F006252	Metagenome / Metatranscriptome	377	Y
F018115	Metagenome / Metatranscriptome	236	Y
F019420	Metagenome / Metatranscriptome	229	Y
F076715	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308418_100301211	F076715	GAGG	MWWKIEPIPHQELEDWERALVRCENRAKRDPMSRAVGVFVIFVREGGTRPEYTPGDKAPDGAYLVGKWTLKKKGWMWYD
Ga0308418_10030122	F019420	AGGGGG	MATYRDVMFWSGATDGDCEATVIRTRLLGMVIELGDEETRTPDTMTAFYEADGGGIIVYEVECWEADGRMTARWQRVASLEDVRRRYAAYLERLEL
Ga0308418_10030123	F006252	GAG	MKSFDEQAAFGLPYERLIAQTAALLLYPHRLDLALVRLDAYAPLDFLIVDGERPVAALEVKRRSVRSDTYRTTILPQSVVDAARRLTVPTYAAILFLDGLAVFDVLRTPSTARWLRTRRGALRKHREYDISERLVKVEEVHQRQRRSA
Ga0308418_10030126	F004307	AGGA	MFKELINHNGNGRERPHLNGAYTGTFLGVKERQRATFETRNAPEQVMEDVFVFEFEVEDDDGNPLRVSKWVRKPARLSHPGKSGKVTNLYRVLAALYGVAQMTDAQLERAEEFVQEAVGREYQLTIETKPSGWCEIVHIAPVRARRKEKPIDEVPF
Ga0308418_10030128	F018115	AGGAG	MSDEAERFVRWYAHLAEDASLDRHATRALLRRALADREALAEYLLEQCTPALLGEFINRHWNDAISDAPSSAALRLASAVMRALGRIEDEHDRRAAEWWFQLGLVPSVRVLRQLCVRINDAR
Ga0308418_10030129	F005028	GAGG	MRDDDLRAASQFFAERLRDAEMDETRLLRWTRHKLRSDAQVVAELMLTVGYRPTFLRYFLRYHIPTINESAAVGETYADPGAAAEAHLGLCWRLDEDVLTVYSDLHAAAKRLRQPYRDLAAVCLRWGYVHETVVQMLARVLERK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308418_1003012

Overview

Ecosystem & Geography

Associated Families

Sequences