Scaffold Ga0308418_1002598

Overview

Basic Information

• Taxon OID: 3300031783
• Scaffold ID: Ga0308418_1002598
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8706
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F008499	Metagenome / Metatranscriptome	332	Y
F025895	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308418_10025985	F025895	N/A	MNELIAWIIAAAIILLLVNTNIADGLLSALDLSDNLKRAAEWARGVRGVPAAVTAFCFFVLAYVFGALAYRYDLLPTYRFIQPVAQDVLASGAEWLTLFTVFLTLLPSLIELASVGLVQRSIKALEYMTYFFVFFDLVTDYTEAAALVDAWQRAGLFDPLPSFLAGAAVVLAKISWTFAASFAFEFLAILFAVTGLLLVANIRAASAGGGTR
Ga0308418_10025988	F008499	GGAGG	LTRRYRSEPKWKRKEREVIAALQATFGRVSDPTLARLLTATGRVGHLTRFGVDGFVGNNPGFAVEVKARKRMLTKQTIDALLQTVDRAAQFNRIPLVAVVLGDDVPARTASGVKVPREWVLIPLGELKKLVGKEVYE
Ga0308418_10025989	F004307	AGGAGG	MFKELISNGNNERPALNGAYVGRFLGVVEKQRATFETRNDPEPVYEDVFVFEFEVDDEELPYPIRVAKWVRKPARLSHPGKGGKVTNLYKVLASLYGVAQMTDEQLLNAEEFVRSAVGREYQLTIETKPSGWYELVHIAPVRRSRQRREVVDVDETVPF