Scaffold Ga0308418_1001259

Overview

Basic Information

• Taxon OID: 3300031783
• Scaffold ID: Ga0308418_1001259
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13649
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (37.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021427	Metagenome / Metatranscriptome	219	Y
F028057	Metagenome	192	N
F032563	Metagenome / Metatranscriptome	179	Y
F042064	Metagenome	159	Y
F046061	Metagenome	152	N
F070747	Metagenome / Metatranscriptome	122	Y
F078076	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308418_100125911	F042064	N/A	MNSIVRHYLAHALEDTNRLAKRLNRGSMLPVVAMWQEGHRLVIASCDNYQQHEFRLFIFRDDPGFPPLLHERVLAFSPAAIAAAARAFYEQLGENDLLHIDYDDDQTTVALTAPGITISLKATESLHRDHIRRFAATFTDTERPDVIKVNAKELLTALPKPRRNNERIYMFVHFHECTWQVGVQSKLNSWQPTEHNGVFDAQDVQGTPGCKLNVQMLREALEIAERYHPFSECTIALTKRNEAVLVQAVVGKVLDFRAYIMPVVNLQP
Ga0308418_100125915	F046061	N/A	MSETIFESLQAMFPPGTPLEFAMDDIRIEGIRPLCVATYSDGTIIVCAFWNADRRKMWAWYDGDKWQVSEQRPSIVDRIKPRQR
Ga0308418_100125921	F032563	N/A	MVMSKEQMTDKRLMELFAAYKQSTDLIVKIWEQDIRGYTGTDYIFEIERQYPGCILTVREVKRRLEQMKIPIYAIYVGARSNVILIEIKADKKKAEKINRRLKAEIPTSGWLIVEHEHQEDGTEEQRSQVKSA
Ga0308418_100125922	F070747	GAG	MEQRNNARKLNQLSARIALLDQKRKEALEQLVNQFCDLYGIAKSRRIDVMETEEKCRGAICAVLFAVNELSKRGIAVKRVYWDKYGGLLISLSDPKLNEVKIDEEIKKLAKQRKKQNCGWFIV
Ga0308418_10012594	F028057	N/A	MNKLNTNQKRRLARAISRAASAELAARQAQLRLVRAERRVVAEEFEALRRIAIIISLPFLFLLCAIFSSFWFILLAEAIIKSSR
Ga0308418_10012598	F021427	N/A	MSESTDLPLFVDESFGITVDPGAWRSHGLWHALCNYLDLLDSRYAGIARIMVDNILSIMRADFMRDTRESKLQRDVFDYRQRLLRKYAPMAHRPESFIV
Ga0308418_10012599	F078076	N/A	MYKLSSSLYDRIRLEEVARAKVREYLRDADIPVWQIDPVELARRVIARENLVLTTDDPDKAKTCYMDQCRRVHAELLCNAIKAHRGRDVEHVRPVRLLLISPESLEDLSDVDDDFTDGYWGDENPDGDLLLSPTSCFGRTRLAIALDAGAKVVHGYEFAYPRSVSNDPLPRGWCGYRTAREGYALQREVAEIVWAASVMKAIKEKNGDLTYVISHCKCI