Scaffold Ga0308418_1000712

Overview

Basic Information

• Taxon OID: 3300031783
• Scaffold ID: Ga0308418_1000712
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18495
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (95.65%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005028	Metagenome / Metatranscriptome	414	Y
F006252	Metagenome / Metatranscriptome	377	Y
F007404	Metagenome / Metatranscriptome	351	Y
F008499	Metagenome / Metatranscriptome	332	Y
F012577	Metagenome / Metatranscriptome	279	Y
F014738	Metagenome / Metatranscriptome	260	Y
F018115	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308418_100071212	F006252	AGGGGG	VRSFDEQAAFGLPYERLIAQAAALLLYPQRLDLTLVRLDAYAPLDFLIVDGERPVAALEVKRRSVRSDAYRTTILPQSVVDAARRLTIPVYAAILFTDGLAVFDVLRTPSTARWLRTRRGALRKHREYDISERLVKVEEVHQRQRRSA
Ga0308418_100071216	F008499	GGA	MKSRSKSEPRWKRKERDALRALQATFGRVSDPSLARLLTPTGRVGHLTRFGVDGFVGNDPGYAVEVKARKHMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERVDE
Ga0308418_100071217	F018115	AGGAG	MSDEEERFVRWYAHLAADAPLDRHAARALLRRALADREALAEYLLNSECAPSLLGEFIYRHWNDALSDAARGASLRLALRTLRALDGLEERDRWAVLEWMQRGVVPSTRILCRLCEEIDD
Ga0308418_100071218	F005028	AGGAG	MRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTFLRYFLRYHIPALNESAAVGERYIDPGAAPEARLGLCWRLDDAVLTVYTDLHAAAKRLKQPYRDLAAVCLRWGYVHETVVQMLAKALERKPRNVVED
Ga0308418_10007123	F012577	AGGAGG	MLVAIAEPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGSITWHALGFGALQREARISVVQNVFTTTKWKPVSSGFMPNSGYNSRPDLWEYEFIPGNLFISIRIVTKRTFTISNSTLFFVAYLYAQPERYATITSNERLYVGVTTTGLATGVWVAPVTAIPQPNTYTLTLGAFSSINNEGVITASTCYGWVVGVRASGNETTVGATSVAFLARINDPGAGGINAELLSTALIARGGCCDIYLPSQTIVDIENPNANLREIIEHVRTDYSSVRYHLKRFLRDRPRPVIDLRSDSTLVWRFPETPRVVDISKAPSRIFAQYRGYWTDHLTATTTIQSLESRRRLARRVAGVGEYGSKTTADARRDEAAIALDRQIAPITVELDNSRYELITREGVAVPNWAADVSDYAIVPGYFRNAKITARTITRERTTYTVSFNPDDFVTVLR
Ga0308418_10007126	F007404	AGGAG	MDIIEIFRLLAAGHSGLTALDYVWNAVFGAIGAATAYLADTNGEVFLPRYDKEQHSVELGALGRVLVGAGAGTLVGYSGYVPFIAGVVAPTLLPALIDKIAWFVERRRR
Ga0308418_10007127	F014738	GGAGG	MKLDVLLLISAFALAFVHPDAAQVAATAVVLLLVTRIERGRRARKKKSAPVAH