NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318508_1040409

Scaffold Ga0318508_1040409


Overview

Basic Information
Taxon OID3300031780 Open in IMG/M
Scaffold IDGa0318508_1040409 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1210
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006086Metagenome / Metatranscriptome382Y
F057810Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0318508_10404091F006086GAGMTPNQLRGAARNLAYGLGIPFYIRDGRICQDGPGLAFLPPNGDPAVAKVPLDQADAANGSLTMPKAIGLLLIATQVLWLACQC
Ga0318508_10404092F057810N/AMTRKFDLWLEEHGKPSNFRRALTDVTGAAYLVKLWFDDHRVSHTAADLVAMTAMVLQREQSLQGSLVRELSQLSAELGDLTDR

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