NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318498_10058406

Scaffold Ga0318498_10058406


Overview

Basic Information
Taxon OID3300031778 Open in IMG/M
Scaffold IDGa0318498_10058406 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1720
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005763Metagenome / Metatranscriptome391Y
F013518Metagenome / Metatranscriptome270N
F094246Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0318498_100584061F094246N/ARGPPPRRADLMGSTGEQPASELVAGLLDTARASRARTMQEVAQAWQRAGTITRNLILMASSEIGSIERPATDLVTQLHMYILVAGPEAATSRSQPPSPLGDGTPRALGGWLTELGHNITSDSGDDPVVTVWQWLADHQAFEAGQAGARRVMRHLAGQDAAGT
Ga0318498_100584062F013518N/AVGRQPRGLLWEPRALDALEQLAGYMPAAARDALDAMERMASTGFNYGRLTRKGVLWYFPTPKLGLFYLDDGRTLIVVDVVDARRLRRLP
Ga0318498_100584063F005763N/AMSQPIEDDWVLDEAEALLDMDGRRERLEQVVADLQSGEVQPVDHATARGRIEKRIQDRRT
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