NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318543_10532505

Scaffold Ga0318543_10532505


Overview

Basic Information
Taxon OID3300031777 Open in IMG/M
Scaffold IDGa0318543_10532505 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)526
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024151Metagenome / Metatranscriptome207Y
F036114Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0318543_105325051F024151N/AGQGRTRPRGSSQMTLTAVERGCAEQLARFFPKLPLVRIPVEVVALRLGQNRLRESTVVEYGTREYAIFLSNLALEFDDRVRLIREGMGKPAEAAVIALQYHEGSKAVAVRFLEGPCDWMVHP
Ga0318543_105325052F036114GGAVNKLITTLNLPAPPKSESSRQAQWDETRSVFPIYLALAKHLQFEIPFPQNKRV

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