Scaffold Ga0308415_1007756

Overview

Basic Information

• Taxon OID: 3300031776
• Scaffold ID: Ga0308415_1007756
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3735
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028964	Metagenome / Metatranscriptome	190	N
F059420	Metagenome	134	Y
F061432	Metagenome / Metatranscriptome	131	N
F096157	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308415_10077561	F061432	AGTAGG	MNSERIDLLERGDSFAPATARVQWVGSADVPANSDVTIPVTAVYEVRGNIFEHVPSAQALRIKQSGVIGYTVNVVCSATGVGNINVLMRQASPFHEWPLVVQPYYLHAGFGFLIGGVRLVGIPEGGANYWVRVAN
Ga0308415_10077562	F028964	AGG	MIGAEVTLALTSLRRPGTRTGALALSGSLERRAMDVAECELEISMSAPSYELSAYGDVLMVMLPDRREYYFVTAIERRNTYYVLRGETFLRYLRDYYPERYAGTSDAQWSGDAAAGVLRSLSPIEYVPVHSFASSFRDRWIITPDNVPPSVNVRTSFAWASRLEAAQEITRLAHAQGFPLVWWFECGRWCAAKDATGNYGVEPSIALVFAHGLPRNGLFRPRWAGSIKYEAWVYDRSQPTAGVALGYGHGQDRDVTRARAARGLFSGWTYWEGRLDGRATGTSAAAQAALMRWRPVEAGTGQAYSQEMPRLGDQVFLVAGDNQRCAGIAHVVSERYVVTGGQVSSAEVGVMQI
Ga0308415_10077563	F059420	AGGAG	MEIELYRGTSSLTTLHYRNAPGQYSWVLRDFQGDLMDEVEVLTREAVGGRTLVAGQQGRARRIVIVLDVQGTSMVNLQAAIKVLEDYTRWRKGTPLELRVRTQAASPWNSIEVVLEQMSAQFEDDQYRATVTMRFACRSIYWREGIGVFPSSNSTLSGNAFVVNLSTMAFTPITGITETINSIEYRAASNEWIIFTSSQVWRAPATGGAAALIGSLSGSTSLRGCVTHDGNIIAVAQGVNFLVRFTYPSSGPTGLGTFNGVPVRVRRFGNSYVSVGEFSQFQTTGGLAGMVTTDVNGNVINPFSPFPTSVVFPGGGRIRDVLIKDDIGVAIAHRAPSPSQSWVAVWSGQVAPYYVADDASTWSPLEIDQSSEIDDVTICAESQIHAGRTFNTLCRLRNLGSIVPFAYPTVAVGSVQDGCAVERFAFTTSEPRKVFRLGVDGTAMPLFTASANSIAIRRVGNLMCIGYVTTANVWTPLTVDVSTIPNTGPTAEIVPRLSGLAVPVFSCYSKVDTEILGEVLDPQTQAANYEPKYHSGGAVTPLPGTRYERMFRGSMNETINRYWFAVGGSVPQNNVTFNRYKHDWR
Ga0308415_10077564	F096157	N/A	FATLSPHVQNILRALAPLVSQIGNALLTFARTFGAVIREALQTLTSFIRAIAALLRGDMDGFMRYLGDSVKNLRELVTTAIRGAVEAVGNLIGVNLTGVLSFIERVNNALLSVRNLGLNVAQAVGSAISSIRLPFGAGGQQQQPMTQNTTNNYVLNVNAASSQGVINDFELMRRLGWR