Scaffold Ga0308415_1003745

Overview

Basic Information

• Taxon OID: 3300031776
• Scaffold ID: Ga0308415_1003745
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5881
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005631	Metagenome / Metatranscriptome	394	N
F010840	Metagenome / Metatranscriptome	298	Y
F016404	Metagenome / Metatranscriptome	247	N
F051735	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308415_10037451	F005631	GGAG	MRVNVSVDLDNALRKLLPRTARIEAALDAGAAAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIKKLSRTSRIVENTASYARYVYGMPQARVHRGRWASVRDAAEAAKKEALAVLKG
Ga0308415_10037454	F016404	GGA	MTVDELLTDESRAAVLRALLMIALDEGVPASARVAAARLFLSQFEEQPNADQSVLVIVDDAAFVKTV
Ga0308415_10037455	F010840	AGGAGG	VNLPFSQPLDKITFGALAAATVIILTWALREFAGIELPPEVQAALAVIIGCVVSYHVPLSKFEAEAIARKYYRNCK
Ga0308415_10037456	F051735	AGGAGG	MFQDVTIINGPVQKNGVSDYERVRIKARPLGRPYAWDNGSPWNDYTTNGGFILVFECEDGAVYVQEIEWEVDPYPAADPSPRTYYYYERYDSLDEARAGWRGWLIEQALRD