Scaffold Ga0308415_1001567

Overview

Basic Information

• Taxon OID: 3300031776
• Scaffold ID: Ga0308415_1001567
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9703
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F007404	Metagenome / Metatranscriptome	351	Y
F012577	Metagenome / Metatranscriptome	279	Y
F014738	Metagenome / Metatranscriptome	260	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308415_10015671	F014738	GGAGG	MKLDVLLLISAFALAFVHPDAAQVAATAVVLLLVTRIERGRRERKKKSAPATR
Ga0308415_100156710	F005302	AGGAGG	MSHSGVIDGLYAGNFAVEISTNLTTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTIGKREPVELTLTFLYNETANSAANTIFDRFQSATPTLGVRWSPRGLVSGARAYATSNDGGATFGLGVITNVTLSALDPSDAEPYVAMVTVRTPSLRQYALGTNPTNLNPAS
Ga0308415_100156711	F002970	GGAG	MSYSSVTDIIELLAGLAVQYNSAVVPVQRLASQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEVDDLLLVRDVGMGRGVADTAAALVDYIEDYVARLRFAWLTRGDVQLLNVSGIVDVVRYGERAYEGVVMTTRFAHLVRAPSA
Ga0308415_10015672	F007404	AGGAG	MDIIEILQLLAAGHAGLTATDYLWNAVFGAIGAATAYLADTNGEVFLPRYDAEQHSVELGALGRVLVGAGAGTLVGYSGYVPFIAGVVAPTLLPALIDKIAGFVERRRK
Ga0308415_10015675	F012577	AGGAG	MLVAITKPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPIYARSGVMTQIGDELIVYCTQLSRTIWRGQIERIEEERDGSITWHALGFGALQRDARISVVQNMTDMTRWKPVGAGFMTGSGYDSRGDLWEYEVVSSSGFTQIRIRTKRTFTISNATLFFLAYLYDQPERYATITTNERVYLFPITSTGLANGVWVAPVTAIPAPNAYTLTLGTFTGINTPGDVTAATCFGWVIGVRAAGNETAAGATSVTFRATINDINTGGVNSAALTNALIGRCGCCDVFFPTQTSISIVKPDANLREMIEQSYGASPIRYPRKRFYRDRPRPIIEFRADSTLVWRFPETTRVTDISKAPNLVFAQYRGYWTDHLTETTTIQSLESRRQLARRVASVGEYGSKALAETRRNEAAIALDRQIAPITVELDNSRYELMTREGVTVPNWAADVSDYAIVPGYYRNAKITARTITRERTTYTVSFNPDDFVTALR
Ga0308415_10015679	F004791	GGAGG	MTNPAEIYDIETIRVDRSALTIREAASVLNNELTAPVVARLVRKAIGSQADRFPLRALKRVYERVLPQIFEPDEAIRSRVAGLVPAVGEITLGEYHEFLDASERKIAFPDVAKTLLIKAYGEDILNEPYAAAALLLKKIFDSIGDEGNE