Scaffold Ga0308415_1000912

Overview

Basic Information

• Taxon OID: 3300031776
• Scaffold ID: Ga0308415_1000912
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13113
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F005028	Metagenome / Metatranscriptome	414	Y
F006252	Metagenome / Metatranscriptome	377	Y
F007404	Metagenome / Metatranscriptome	351	Y
F014738	Metagenome / Metatranscriptome	260	Y
F016100	Metagenome / Metatranscriptome	249	Y
F025895	Metagenome / Metatranscriptome	199	Y
F032180	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308415_100091211	F006252	GGAGG	MLRSFEEQAAFGLPYERVIAQTAATLLYPHRLGLELVRLNEYASLDFLLLDNGQPIAALEVKRRSVRSDTYRTTILPQSVVDAARRLTIPVYAAILFSDGLAVFNVLSTPSRVRWLRTRRGTLRKHREYDIRERVVRVEAVHQRPRGCDTRSRYAA
Ga0308415_100091213	F016100	AGGAGG	MVISVKVERFKEYSELMRVVSRSEKTPATNKDIIRPLNYELLIGSHLPEPDWHRLGALVVALFRGFTVVDVEIWKNDFGVWFADSFIEIGRRHRLRRGQGDTPIQAMIELITNIQRY
Ga0308415_100091214	F014738	GGAGG	MKLEVLLMISAFAFAFVHPDAAQVAATAVVLLLVTRIERGRRARKKKSAPVVR
Ga0308415_100091215	F007404	GGAGG	MDIVEMLQLLAAGHNGLTAIDYVWNAVFGAIGAATAYLADTNGEVFLPRYDREQHSVELGALGRVLVGAGAGVLVGYSGYVPFIAGVVAPTLLPLLIDKIAGFAGRERK
Ga0308415_10009123	F025895	AGGGGG	MSEIISWVVAAGVIFALVNSNAADGILSALDLSDNLRRAVDWARGVRGVPALVAAICFFIMAYVFGALAYRYDLVPTWRFIQPIAADVLSTGAEWLTLFALFLTLLPTLIELATVGLVQRDIKTLQWMVYFFIFFDLVTDYKEAVALVETWRRNGLFAPLPDALEGAAAVMAKIGWTFAASFAFEFLTILCAVTALLLAANVRASASGGGGR
Ga0308415_10009124	F032180	AGGA	MWWKIEEVPHQELEDWANAVGCFERAAKRDVAVRAAGAFVIYDLDGKLGYVAGREAPEGAYLVERWVRGKRGWTLYE
Ga0308415_10009125	F005028	AGGAG	MRDDDLHAAMRFFAERLRGAEADETRLRRWTRHKLRNDAQAVAELMLTVGYRPTFIRYFLRYHIRAVDPETDSEDVVLVVADLHAAAKRLKQPYRDLAAVCLKWGYVHETVVQMLAKILERKQ
Ga0308415_10009128	F004307	AGGA	MFKELINHNGNGRERPELNGAYIGRFLGVKERQRPTFETRNDPEPTFEDVFVFEFEVEDDDGNPLRVSKWVRKPTRLTHPSKNGKVTNLYRVLAALYGVAQMTDAQLERAEEFVENEAIGREYQLTLETKPSGWVEIVHIAPVRKARNRKKEEDEEVPF