Scaffold Ga0315326_10394017

Overview

Basic Information

• Taxon OID: 3300031775
• Scaffold ID: Ga0315326_10394017
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 900
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F010950	Metagenome	297	Y
F018286	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315326_103940171	F005547	AGGAG	MKVWVMQGSYEGELFSTVHLTQKGCALACISDILEFLDVEDDETALSMMNACNPYAETDGDQTEAIEWDQEKLKEMTSEQLWKIFADWCEMSWDRMADRSYNIDANAVEIQA
Ga0315326_103940172	F010950	GGAG	MNIWVVRQTCLYDNESYVSSHLTEKGALITAIRTVREDLCDGFDEDELEDMRPDLPHNHEEDLMQYNSEQLRGIIEDWWEYSWEINEQAQYQIYETQVEA
Ga0315326_103940173	F018286	AGGTGG	MKVLTTFILVGMVDSHDAHFATVELNTTPASNGGPATAVMPVAAFPCEIYEGKVFYVVKLHDEQDAVIVCQKESED