NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315331_10900721

Scaffold Ga0315331_10900721


Overview

Basic Information
Taxon OID3300031774 Open in IMG/M
Scaffold IDGa0315331_10900721 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)610
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023845Metagenome208Y
F041145Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0315331_109007211F041145GAGGLSKPANIKHDNLVTKLEMLVKLCEETEPTPKQLLKMSGEKNANITDLFTPEMVDAQFYLQEVKEREYDSYSIVDIMRACNVMWRWRLKVKKEGWPDMSSIEYRCGELLKKSQKIQAIKDYRAYMEKMNNDCSLRQAKEWVDKLAIKLDLD
Ga0315331_109007212F023845N/AEKLIENHVKECRRNIPWSGEHRMVVDKIINIFKRTH

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