Scaffold Ga0315331_10595168

Overview

Basic Information

• Taxon OID: 3300031774
• Scaffold ID: Ga0315331_10595168
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 792
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD10-C281 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016160	Metagenome	249	Y
F041181	Metagenome	160	N
F074856	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315331_105951682	F041181	AGGA	MLTKNKIKQINKDGWYWAEGPVVMGNYGDTHTFTFCMCRNHAEATAVASGLNILDWNDSNEEN
Ga0315331_105951683	F074856	GGA	MKKRNTNKTITGWALQVTWSDSRDETITDIDDETASAVDTFLTELEQERDANKK
Ga0315331_105951685	F016160	N/A	INRHWSRKIMSRQLENYGINILQLHAAWLVANGYKLQAKSCKRQIRMILINKRKKKATSNKLQA