Scaffold Ga0315331_10124179

Overview

Basic Information

• Taxon OID: 3300031774
• Scaffold ID: Ga0315331_10124179
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1922
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F004603	Metagenome	431	Y
F037256	Metagenome	168	Y
F038854	Metagenome / Metatranscriptome	165	Y
F098031	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315331_101241794	F002399	GGAGG	MSKENRSKYKSIIGQLRKKYGLKDNTPIHKVEQIMTPKDWKAFSTALTFPNGKPTQRGK
Ga0315331_101241795	F098031	AGGGGG	MKYNVELHVIQMHDVEVNATSYEDARNKAIQEWKDGYIYNDVGSPTFCKEEAKVVSFVSMPTIEEVLN
Ga0315331_101241796	F038854	AGGAGG	MNNPRRIVSATILVEWSDNPKPVVLNNDMPNGLANDFDDWLTEIEEEEQD
Ga0315331_101241797	F037256	AGGAG	MNNKKEYIFSNTFTVTEETEVLANSYEEAVDIFLSGGGTTDEVDSCGGDWECIQEPTDDEKQNQ
Ga0315331_101241798	F004603	AGAAG	MIFSININGSIIDWCYTINNQEKQYHQTWIPKLSDIQIVTKELNGLTVSEVKKLILEDIQPDIQMVRDNTNKKARARREKNV